Package: BisqueRNA 1.0.5
Brandon Jew
BisqueRNA: Decomposition of Bulk Expression with Single-Cell Sequencing
Provides tools to accurately estimate cell type abundances from heterogeneous bulk expression. A reference-based method utilizes single-cell information to generate a signature matrix and transformation of bulk expression for accurate regression based estimates. A marker-based method utilizes known cell-specific marker genes to measure relative abundances across samples. For more details, see Jew and Alvarez et al (2019) <doi:10.1101/669911>.
Authors:
BisqueRNA_1.0.5.tar.gz
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BisqueRNA.pdf |BisqueRNA.html✨
BisqueRNA/json (API)
| # Install 'BisqueRNA' in R: |
| install.packages('BisqueRNA', repos = c('https://cozygene.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cozygene/bisque/issues
Last updated 4 years agofrom:8640250dff. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 03 2024 |
| R-4.5-win | OK | Nov 03 2024 |
| R-4.5-linux | OK | Nov 03 2024 |
| R-4.4-win | OK | Nov 03 2024 |
| R-4.4-mac | OK | Nov 03 2024 |
| R-4.3-win | OK | Nov 03 2024 |
| R-4.3-mac | OK | Nov 03 2024 |
Exports:CalculateSCCellProportionsGenerateSCReferenceMarkerBasedDecompositionReferenceBasedDecompositionSeuratToExpressionSetSimulateData
Dependencies:BiobaseBiocGenericsgenericslimSolvelpSolveMASSquadprog
